Please read the following carefully.
What is an assumption?
Something that is accepted as true without proof.
I also wish you to know that if an assumption is made in order to test a hypothesis, and that assumption turns out to be false, then the assumption is rejected.
The assumptions of science are:
1. Nature is orderly, it has a pattern, and structure.
2. We can know nature.
3. All phenomena have natural causes.
4. Nothing is self evident. Truth claims must be demonstrated objectively.
5. Knowledge is derived Empirically. [Through] senses directly or indirectly.
6. Knowledge is superior to ignorance.
For all these assumptions 1-6, there is no proof, they are held to be true.
Not exactly. They are held because these assumptions are necessary in order to be able to obtain knowledge that is falsifiable and verifiable.
You must believe that the assumptions are true to accept Science.
Again, not really. You just have to accept these are the limitations of science. Anything that is not covered by these assumptions, science by definition is incapable of measuring, testing, and quantifying, thus to derive knowledge from it.
My problem is with assumptions numbers 3, and 5.
All phenomena have natural causes.
What an incredible assumption to make.
This is well beyond the scope of thought to assume.
Since, Science cannot prove or disprove the existence of God.
How is it possible to make an assumption regarding natural causes?
Jesus Christ created the Universe.
Test that one Mr Scientist.
First you must understand why that assumption is necessary. By definition, something that is not natural, that is out of this world, can't be measured. This assumption makes sure EVERY explanations a scientist proposes MUST be able to be verified. One cannot explain something by saying 'This reaction occurred because of God', because then, how are other scientists to measure this claim? It's impossible. A scientist could say he obtained certain data because of God, Bigfoot, fairies, unicorns, etc etc etc, and there would be NO way to test to see whether his explanations are correct and accurate or not. That is why science limits itself to the natural world, because then it can correct its own mistakes.
Take your hypothesis for example. Jesus Christ created the universe. How would one go about testing that? You can't know how, by what mechanism, why, how much, nor how fast Jesus might have created the universe. Think about it, the fact you say Jesus Christ created the universe is because evidence in the physical universe leads you to believe Jesus did it.
Knowledge is derived empirically.
Empiricism emphasizes evidence, in experiments.
Rather than on reasoning, intuition, or revelation.
Note: Jesus Christ is revelation.
The Bible is revelation.
Empiricism is going nowhere.
In conclusion, Science is going nowhere,
it never had it in the first place.
Reasoning, intuition and revelation can mislead us very easily. Your intuition, reasoning and revelation leads you to say that God is the one true god and the creator of the universe. A Muslim's reasoning, intuition and revelation would lead him to say Allah is the one true god and the creator of the Universe. A Hindu's reasoning, intuition and revelation would lead him to say that there are a multitude of true gods, and that they created and govern the universe. So, how do you know which one is true? They are all true according to their own religious books. All religions are true according to their own beliefs. So how do you sort it all out?
Empiricism is superior to reasoning, intuition and revelation because reasoning might lead you astray . A man attempted to say pure logic was superior to everything. Logically, he could tell me that a cow was a cow and that grass was grass, but he was unable through pure logic to tell me that cows eat grass. That would require empiricism. How does the man ensure his logical method is accurate and correct? He can review his logic all he wants, but sooner or later he must compare his logic to the real world to make sure he's not off-track.
Your intuition can lead you astray. It seems very counter-intuitive that all matter behaves bothas a wave and as a particle, and yet it is true. Light behaves as a wave, with frequency and amplitude, and as a particle, because light has momentum that can be transferred to an object. Waves don't have momentum. How do you see if your intuition is indeed correct? Sometimes, intuition helps you, other times it doesn't. Intuition is not reliable.
Revelation might lead you astray. You have a revelation of God. A Jew has a revelation of YWHW. Ancient Greeks had revelation of their pantheon. Insane people have revelations of Gd telling them to do random things. How do you see which revelation is true? Again, how do you sort it out?
Empiricism gives scientists a way to rigidly define what they can and can't do, as well as the means to determine whether something is accurate or not. Revelation didn't discover electricity. Intuition didn't explain bacteria. Reasoning didn't formulate the laws of motion. Empiricism alone didn't do it all either. It was a combination of them all.
When scientists were searching for the shape of the benzene molecule, they had no idea what it looked like due to its weird properties. Then, a scientist had a revelation, and saw in a dream a snake biting its tail. He knew then that benzene was made of carbon atoms in a ring. Empirical experiences later showed this to be accurate.
When Mendel wrote his laws of genetics, he arrived at the conclusion that the phenotype and genotype of descendants could be accurately predicted. The problem was, he arrived at too perfect an answer. Using modern day methods and knowing the laws of genetics, we cannot arrive at a definite 3:1 ratio. The ratio using around 700 samples looks like 3.4 : 0.8. We therefore think that possibly Mendel knew what to expect, and by intuition he made an assumption to write his laws, which has been proven accurate using modern techniques and knowledge.
The ancient Greeks used their logic to determine many things. One Greek philosopher (I forgot the name) said that matter was made of indivisible particles. Sounds a lot like atoms, doesn't it? One other philosopher said matter was a combination of water, earth, fire and air. Which one was correct? Using only the reasoning of their time, it was impossible to determine. However, again, with modern empirical techniques, we found out that the classical philosophy of earth/fire/water/air was false.
Empiricism is not everything, it does not reign supreme. Whereas reason, intuition and revelation are human qualities, empiricism is a method to determine the validity of a claim within specific parameters.
Thus, your demand that scientists test whether Jesus Christ created the universe or not is unscientific, because 1) We cannot test it, 2) we cannot replicate it, and 3) we cannot measure it.
However, by studying the universe that Jesus supposedly created, we have found evidence showing that there was no special creation. If there had been, science would have found itself facing a wall it could not explain. That has not yet been the case.